Synlett 2010(18): 2759-2764  
DOI: 10.1055/s-0030-1259007
LETTER
© Georg Thieme Verlag Stuttgart ˙ New York

Mild and General One-Pot Reduction and Cyclization of Aromatic and Heteroaromatic 2-Nitroamines to Bicyclic 2H-Imidazoles

Emily J. Hanan*, Bryan K. Chan, Anthony A. Estrada, Daniel G. Shore, Joseph P. Lyssikatos
Discovery Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080, USA
Fax: +1(650)7424943; e-Mail: hanan.emily@gene.com;
Further Information

Publication History

Received 23 July 2010
Publication Date:
14 October 2010 (online)

Abstract

A one-pot procedure for the conversion of aromatic and heteroaromatic 2-nitroamines into bicyclic 2H-benzimidazoles is described. The procedure employs formic acid, iron powder, and an additive such as NH4Cl to reduce the nitro group and effect the imidazole cyclization with high-yielding conversions generally within one to two hours. The compatibility with a wide range of functionality demonstrates the general utility of this procedure.

    References and Notes

  • 1a Horton DA. Bourne GT. Smythe ML. Chem. Rev.  2003,  103:  893 
  • 1b Spasov AA. Yozhitsa IN. Bugaeva LI. Anisimova VA. Pharm. Chem. J.  1999,  33:  232 
  • 2 Ding S. Gray NS. Ding Q. Schultz PG. Tetrahedron Lett.  2001,  42:  8751 
  • 3a Phillips MA. J. Chem. Soc.  1928,  2393 
  • 3b Wright JB. Chem. Rev.  1951,  48:  397 
  • 3c Subasinghe NL. Travins JM. Ali F. Huang H. Ballentine SK. Marugan JJ. Khalil E. Hufnagel HR. Bone RF. Desjarlais RL. Crysler CS. Ninan N. Cummings MD. Molloy CJ. Tomczuk BE. Bioorg. Med. Chem. Lett.  2006,  16:  2200 
  • 3d Minetti P. Tinti MO. Carminati P. Castorina M. Di Cesare MA. Serio SD. Gallo G. Ghirardi O. Giorgi F. Giorgi L. Piersanti G. Bartoccini F. Tarzia G. J. Med. Chem.  2005,  48:  6887 
  • 3e Suzuki N. Tanaka Y. Dohmori R. Chem. Pharm. Bull.  1980,  28:  235 
  • 3f Seley KL. O’Daniel PI. Salim S. Nucleosides, Nucleotides Nucleic Acids  2003,  22:  2133 
  • 3g Maron D. Kontorowitsch M. Bloch J.-J. Ber. Dtsch. Chem. Ges.  1914,  47:  1352 
  • 3h van Galen PJM. Nissen P. van Wijngaarden I. Ijzerman AP. Soudijn W. J. Med. Chem.  1991,  34:  1202 
  • 3i Palmer BD. Smaill JB. Boyd M. Boschelli DH. Doherty AM. Hamby JM. Khatana SS. Kramer JB. Kraker AJ. Panek RL. Lu GH. Dahring TK. Winters RT. Showalter HDH. Denny WA. J. Med. Chem.  1998,  41:  5457 
  • 4a Boydston AJ. Pecinovsky CS. Chao ST. Bielawski CW. J. Am. Chem. Soc.  2007,  129:  14550 
  • 4b Wallace EM, Lyssikatos JP, Marlow AL, and Hurley TB. inventors; US 2003/216460  A1. 
  • 4c Huisgen R. Justus Liebigs Ann. Chem.  1948,  559:  101 
  • 4d Cholody WM. Hernandez L. Hassner L. Scudiero DA. Djurickovic DB. Michejda CJ. J. Med. Chem.  1995,  38:  3043 
  • 4e VanVliet DS. Gillespie P. Scicinski JJ. Tetrahedron Lett.  2005,  46:  6741 
  • 4f Chen JJ. Thakur KD. Clark MP. Laughlin SK. George KM. Bookland RG. Davis JR. Cabrera EJ. Easwaran V. De B. Zhang YG. Bioorg. Med. Chem. Lett.  2006,  16:  5633 
  • 4g Boydston AJ. Khramov DM. Bielawski CW. Tetrahedron Lett.  2006,  47:  5123 
  • 4h Boydston AJ. Vu PD. Dykhno OL. Chang V. Wyatt AR. Stockett AS. Ritschdorff ET. Shear JB. Bielawski CW. J. Am. Chem. Soc.  2008,  130:  3143 
  • 5a Roth T. Morningstar ML. Boyer PL. Hughes SH. Buckheit RW. Michejda CJ. J. Med Chem.  1997,  40:  4199 
  • 5b Nozary H. Piguet C. Tissot P. Bernardinelli G. Bunzli J.-CG. Deschenaux R. Guillon D. J. Am. Chem. Soc.  1998,  120:  12274 
  • 5c Suami T. Day A. J. Org. Chem.  1959,  24:  1340 
  • 5d Piguet C. Bocquet B. Helv. Chim. Acta  1994,  77:  931 
  • 5e McKenzie BM. Miller AK. Wojtecki RJ. Johnson JC. Burke KA. Tzeng KA. Mather PT. Rowan SJ. Tetrahedron  2008,  64:  8488 
  • 6a Radl S. Hradil P. Coll. Czech. Chem. Commun.  1991,  56:  2420 
  • 6b Efremov IV, Rogers BN, Duplantier AJ, Zhang L, Zhang Q, and Maklad NS. inventors; US 2008/0312271  A1. 
  • 7a Wu W.-L. Burnett DA. Spring R. Greenlee WJ. Smith M. Favreau L. Fawzi A. Zhang H. Lachowicz JE. J. Med. Chem.  2005,  48:  680 
  • 7b Burnett DA, and Wu W.-L. inventors; US 2008/312218  A1. 
  • 7c Bounaud P.-Y, Smith CR, and Jefferson EA. inventors; WO 2008/51808  A2. 
  • 7d Foster R. Ing HR. Rogers EF. J. Chem. Soc.  1957,  1671 
  • 7e Bolger J, Castelhano AL, Crew AP, Dong H.-Q, Honda A, Laufer R, Li A.-H, Mulvihill K, Qui L, Sambrook-Smith CP, Sun Y, Wynne GM, and Zhang T. inventors; WO  2005/21531A1. 
  • 7f Crew AP, Cox M, Laufer R, Pegg NA, Smith S, Peter C, Sun Y, Wilkes RD, and Williams J. inventors; US 2006/116402  A1. 
  • Bongartz J.-P, Andre M, Meerpoel L, Boeckx GM, Van Lommen G, Buyck C, Obrecht D, Ermert P, and Luther A. inventors; WO 2008/148840  A1. (a)
  • (b) Popil’nichenko SV. Brovarets BS. Drach BS. Russ. J. Org. Chem.  2004,  40:  219 
  • 11a FeCl2 has been reported to reductively cleave isoxazoles: Auricchio S. Bini A. Pastormerlo E. Truscello AM. Tetrahedron  1997,  53:  10911 
  • 11b Nitro-isoxazoles have been reported to undergo acid-catalyzed thermal isomerization and hydrolysis: Pinho e Melo TMVD. Curr. Org. Chem.  2005,  9:  925 
  • 12a Krasovskiy A. Malakhov V. Gavryushin A. Knochel P. Angew. Chem. Int. Ed.  2006,  45:  6040 
  • 12b Krasovskiy A. Knochel P. Angew. Chem. Int. Ed.  2004,  43:  3333 
  • 12c Wunderlich SH. Knochel P. Angew. Chem. Int. Ed.  2009,  48:  9717 
  • 13 Piller FM. Appukkuttan P. Gavryushin A. Helm M. Knochel P. Angew. Chem. Int. Ed.  2008,  47:  6802 
  • 14 Wundt E. Ber. Dtsch. Chem. Ges.  1878,  11:  826 
  • 15 v. Auwers K. Maws W. Ber. Dtsch. Chem. Ges.  1928,  61:  2415 
  • 16 Fischer O. Rigaud M. Ber. Dtsch. Chem. Ges.  1901,  34:  4204 
  • 17 Sekikawa I. Bull. Chem. Soc. Jpn.  1958,  31:  252 
  • 18 Van Vliet DS. Gillespie P. Scicinski JJ. Tetrahedron Lett.  2005,  46:  6741 
  • 19 Fischer O. Ber. Dtsch. Chem. Ges.  1904,  37:  557 
  • 20 Rabiger DJ. Joullie MM. J. Chem. Soc.  1964,  915 
  • 21 Rabiger DJ. Joullie MM. J. Org. Chem.  1961,  26:  1649 
  • 22 Howell JR. Rasmussen M. Austr. J. Chem.  1993,  46:  1177 
  • 23 Robinson FM. Miller IM. McPherson JF. Folkers K. J. Am. Chem. Soc.  1955,  77:  5192 
  • 24 Weidenhagen R. Weeden U. Ber. Dtsch. Chem. Ges.  1938,  71:  2347 
  • 25 Graboyes H. Day AR. J. Am. Chem. Soc.  1957,  79:  6421 
  • 26 Rousseau RJ. Robins RK. J. Heterocycl. Chem.  1965,  2:  196 
8

The role of the alcohol co-solvent in this reaction is to increase solubilization of the substrate and may be omitted for substrates with good solubility in neat formic acid (unpublished observation).

9

If the reaction is followed by LC-MS at shorter time intervals, the progression from starting material to bisaniline to N-formylated aniline to cyclized product can typically be observed.

10

Analytical Data for Compounds 2-19
1-Ethyl-1 H -benzo[ d ]imidazole ¹6 (2) ESI-MS: m/z = 147.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 8.23 (s, 1 H), 7.62 (dd, J = 18.0, 7.9 Hz, 2 H), 7.22 (dt, J = 15.0, 7.2 Hz, 2 H), 4.28 (q, J = 7.3 Hz, 2 H), 1.41 (t, J = 7.3 Hz, 3 H).
1-Phenyl-1 H -benzo[ d ]imidazole ¹7 (3)
ESI-MS: m/z = 195.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 8.56 (s, 1 H), 7.78 (dd, J = 6.5, 2.3 Hz, 1 H), 7.69 (dd, J = 8.4, 1.1 Hz, 2 H), 7.67-7.60 (m, 3 H), 7.51 (t, J = 7.2 Hz, 1 H), 7.38-7.28 (m, 2 H).
N , N -Dimethyl-1 H -benzo[ d ]imidazol-6-amine (4)
ESI-MS: m/z = 162.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.0 (br s, 1 H), 7.96 (s, 1 H), 7.40 (br s, 1 H), 6.78 (d, J = 7.9 Hz, 2 H), 2.88 (s, 6 H).
5-Ethoxy-1 H -benzo[ d ]imidazole ¹8 (5) ESI-MS: m/z = 163.0 [M + H]+. ¹H NMR (400 MHz, DMSO, reported as a mixture of tautomers): δ = 12.25 (br s, 0.4 H), 12.20 (br s, 0.6 H), 8.10 (br s, 0.4 H), 8.04 (br s, 0.6 H), 7.49 (br d, J = 8.8 Hz, 0.6 H), 7.38 (br d, J = 8.2 Hz, 0.4 H), 7.14 (br s, 0.4 H), 6.98 (br s, 0.6 H), 6.83-6.77 (m, 1 H), 4.03 (q, J = 6.9 Hz, 2 H), 1.34 (t, J = 6.9 Hz, 3 H).
1 H -Benzo[ d ]imidazole-5-carbonitrile ¹9 (6)
ESI-MS: m/z = 144.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.96 (s, 1 H), 8.47 (s, 1 H), 8.16 (s, 1 H), 7.76 (d, J = 8.0 Hz, 1 H), 7.59 (d, J = 8.1 Hz, 1 H).
5-Chloro-1 H -benzo[ d ]imidazole ²0 (7) ESI-MS: m/z = 152.9 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.60 (s, 1 H), 8.27 (s, 1 H), 7.62 (m, 2 H), 7.22 (d, J = 7.7 Hz, 1 H).
4-Chloro-1 H -benzo[ d ]imidazole ²¹ (8)
ESI-MS: m/z = 153.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 8.31 (s, 1 H), 7.55 (d, J = 7.9 Hz, 1 H), 7.30-7.05 (m, 2 H).
5-Iodo-1 H -benzo[ d ]imidazole ²² (9)
ESI-MS: m/z = 244.9 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.52 (br s, 1 H), 8.19 (s, 1 H), 7.95 (s, 1 H), 7.47 (dd, J = 8.4, 1.4 Hz, 1 H), 7.43 (d, J = 8.4 Hz, 1 H).
Methyl 1 H -Benzo[ d ]imidazole-7-carboxylate ²³ (10)
ESI-MS: m/z = 177.3 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.56 (s, 1 H), 8.31 (s, 1 H), 7.97 (d, J = 8.0 Hz, 1 H), 7.86 (d, J = 7.6 Hz, 1 H), 7.32 (t, J = 7.8 Hz, 1 H), 3.95 (s, 3 H).
1 H -Benzo[ d ]imidazol-5-ol ²4 (11)
ESI-MS: m/z = 135.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.21 (br s, 1 H), 9.08 (s, 1 H), 8.03 (s, 1 H), 7.37 (d, J = 8.6 Hz, 1 H), 6.87 (s, 1 H), 6.68 (d, J = 8.5 Hz, 1 H).
5-(Allyloxy)-1 H -benzo[ d ]imidazole (12)
ESI-MS: m/z = 175.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.25 (s, 1 H), 8.08 (s, 1 H), 7.45 (s, 1 H), 7.08 (s, 1 H), 6.83 (dd, J = 8.7, 2.0 Hz, 1 H), 6.07 (ddt, J = 17.2, 10.5, 5.2 Hz, 1 H), 5.41 (ddd, J = 17.3, 3.4, 1.6 Hz, 1 H), 5.26 (dd, J = 10.5, 1.5 Hz, 1 H), 4.61-4.54 (m, 2 H).
5-(Triisopropylsilyloxy)-1 H -benzo[ d ]imidazole (13)
ESI-MS: m/z = 291.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.17 (s, 1 H), 8.09 (s, 1 H), 7.43 (s, 1 H), 6.99 (s, 1 H), 6.76 (d, J = 8.9 Hz, 1 H), 1.25 (dd, J = 14.9, 7.2 Hz, 3 H), 1.07 (d, J = 7.4 Hz, 18 H).
5-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2-yl)-1 H -benzo[ d ]imidazole (14)
ESI-MS: m/z = 245.4 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.48 (s, 1 H), 8.24 (s, 1 H), 7.90 (s, 1 H), 7.57 (s, 1 H), 7.50 (d, 1 H), 1.31 (s, 12 H).
3 H -Imidazo[4,5- f ]quinoline ²5 (15)
ESI-MS: m/z = 169.9 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 13.51 (br s, 0.5 H), 12.94 (br s, 0.5 H), 8.86-8.85 (m, 1 H), 8.78 (br s, 1 H), 8.38 (br s, 1 H), 7.97 (br d, J = 7.8 Hz, 1 H), 7.81 (d, J = 8.9 Hz, 1 H), 7.61 (dd, J = 8.3, 4.3 Hz, 1 H).
3-{1 H -Benzo[ d ]imidazol-5-yl}-3 H -imidazo[4,5- b ]pyridine (16)
ESI-MS: m/z = 250.2 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 12.72 (s, 1 H), 8.83 (s, 1 H), 8.36 (s, 1 H), 8.28 (s, 1 H), 8.13 (s, 1 H), 8.02 (s, 1 H), 7.85-7.60 (m, 2 H), 2.46 (s, 3 H).
6-Bromo-7-methyl-3 H -imidazo[4,5- b ]pyridine ²6 (17)
ESI-MS: m/z = 211.9 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 8.42 (s, 1 H), 8.40 (s, 1 H), 2.60 (s, 3 H).
6-Phenyl-1 H -imidazo[4,5- c ]pyridine (18)
ESI-MS: m/z = 196.3 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 9.00 (s, 1 H), 8.40 (s, 1 H), 8.16-8.06 (m, 3 H), 7.53-7.43 (m, 2 H), 7.43-7.34 (m, 1 H).
6-Chloro-1 H -imidazo[4,5- c ]pyridine ²7 (19)
ESI-MS: m/z = 153.8 [M + H]+. ¹H NMR (400 MHz, DMSO): δ = 8.74 (s, 1 H), 8.45 (s, 1 H), 7.67 (s, 1 H).