Subscribe to RSS
DOI: 10.1055/s-2000-3700
Molecular Phylogenetics of Bromeliaceae: Evidence from trnL(UAA) Intron Sequences of the Chloroplast Genome
Publication History
November 5, 1999
February 1, 2000
Publication Date:
31 December 2000 (online)
Abstract
Phylogenetic relationships within Bromeliaceae were assessed by comparative sequencing of chloroplast trnL(UAA) intronic DNA. Sixty-seven taxa were analyzed, encompassing 62 species, two subspecies and two varieties from 32 bromeliad genera. One representative of Rapateaceae and two of Velloziaceae were used as outgroups. Introns were amplified by the polymerase chain reaction and conserved flanking primers. Amplification products were sequenced directly. Of 700 base pairs total trnL (UAA) intron size, 551 bp could be unambiguously aligned. Sequence divergence among ingroup taxa ranged from zero to 4.6 %. Phylogenetic reconstruction by parsimony analysis of 73 informative base substitutions yielded 1092 most parsimonious trees. The topology of the resulting strict consensus tree was only partially consistent with current classification schemes. Brocchinia and Ayensua grouped close together and formed a well-supported basal clade, suggesting a sister group relationship of both to the remainder of the family. The remaining ingroup species were divided into an unresolved polytomy of three lineages, comprising (1) all members of subfamily Tillandsioideae, (2) the three investigated Hechtia species, and (3) all Bromelioideae and the remaining Pitcairnioideae (except Brocchinia, Ayensua and Hechtia). The latter clade was split into another polytomy of five sublineages, one of which comprised all Bromelioideae. Whereas monophyly of Tillandsioideae and Bromelioideae was supported by trnL intron data, Pitcairnioideae as traditionally circumscribed are clearly polyphyletic. There is evidence that the genera Tillandsia, Vriesea, Guzmania, Abromeitiella, Deuterocohnia, Dyckia, Pitcairnia and Aechmea in the present circumscription are not monophyletic.
Key words
Bromeliaceae - phylogeny - subfamilial grouping - delimitation of genera - trnL intron - chloroplast genome
References
- 01 APG, . (1998); An ordinal classification for the families of flowering plants. Ann. Missouri Bot. Gard.. 85 531-553
- 02 Baldwin, B. G.,, Sanderson, M. J.,, Porter, J. M.,, Wojciechowski, M. F.,, Campbell, C. S.,, and Donghue, M. J.. (1995); The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard.. 82 242-277
- 03 Böhle, U. R.,, Hilger, H.,, and Martin, W. F.. (1996); Island colonization and evolution of the insular woody habit in Echium L. (Boraginaceae). Proc. Natl. Acad. Sci. USA. 93 11 740-11 745
- 04 Brown, G. K., and Gilmartin, A. J.. (1989 a); Chromosome numbers in Bromeliaceae. Amer. J. Bot.. 76 657-665
- 05 Brown, G. K., and Gilmartin, A. J.. (1989 b); Stigma types in Bromeliaceae. A systematic survey. Syst. Bot.. 14 110-132
- 06 Brown, G. K., and Terry, R. G.. (1992); Petal appendages in Bromeliaceae. Amer. J. Bot.. 79 1051-1071
-
07 Chase, M. W.,, Stevenson, D. W.,, Wilkin, P.,, and Ruddall, P. J.. (1995)
Monocot systematics: a combined analysis. Monocotyledons: Systematics and Evolution. Rudall, P. J., Cribb, P. J., Cutler, D. F., and Humphries, C. J., eds. Kew; Royal Botanic Gardens pp. 685-730 - 08 Clark, W. D., and Clegg, M. T.. (1990); Phylogenetic comparisons among rbcL sequences in the Bromeliaceae. Amer. J. Bot.. 77 115 (Abstract)
- 09 Clark, W. D.,, Gaut, B. S.,, Duvall, M. R.,, and Clegg, M. T.. (1993); Phylogenetic relationships of the Bromeliiflorae - Commeliniflorae - Zingiberiflorae complex of monocots based on rbcL sequence comparisons. Ann. Missouri Bot. Gard.. 80 987-998
- 10 Cros, J.,, Combes, M. C.,, Trouslot, P.,, Anthony, F.,, Hamon, S.,, Charrier, A.,, and Lashermes, P.. (1998); Phylogenetic analysis of chloroplast DNA variation in Coffea L. Mol. Phylogenet. Evol.. 9 109-117
- 11 Doyle, J. J., and Doyle, J. L.. (1987); A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull.. 19 11-15
- 12 Duvall, M. R.,, Clegg, M. T.,, Chase, M. W.,, Clark, W. D.,, Kress, W. J.,, Hills, H. G.,, Eguiarte, L. E.,, Smith, J. F.,, Gaut, B. S.,, Zimmer, E. A.,, and Learn jr., G. H.. (1993); Phylogenetic hypotheses for the monocotyledons constructed from rbcL sequence data. Ann. Missouri Bot. Gard.. 80 607-619
- 13 Eriksson, T.. (1998) AutoDecay, version 4.0. Stockholm University; Program available from the author at http://www.bergianska.se/personal/TorstenE/AutoDecay/
- 14 Felsenstein, J.. (1985); Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39 783-791
- 15 Felsenstein, J.. (1995) PHYLIP 3.5 manual. Berkeley; University of California Herbarium
- 16 Gardner, C. S.. (1986); Preliminary classification of Tillandsia based on floral characters. Selbyana. 9 130-146
- 17 Gielly, L., and Taberlet, P.. (1996); A phylogeny of the European gentians inferred from chloroplast trnL (UAA) intron sequences. Bot. J. Linn. Soc.. 120 57-75
- 18 Gilmartin, A. J., and Brown, G. K.. (1987); Bromeliales, related monocots, and resolution of relationships among Bromeliaceae subfamilies. Syst. Bot.. 12 493-500
- 19 Gilmartin, A. J.,, Brown, G. K.,, Varadarajan, G. S.,, and Neighbors, N.. (1989); Status of Glomeropitcairnia within evolutionary history of Bromeliaceae. Syst. Bot.. 14 339-348
- 20 Givnish, T. J.,, Sytsma, K. J.,, and Smith, J. F.. (1990); A re-examination of phylogenetic relationships among bromeliad subfamilies using cpDNA restriction site variation. Amer. J. Bot.. 77 133 (Abstract)
-
21 Givnish, T. J.,, Sytsma, K. J.,, Smith, J. F.,, Hahn, W. J.,, Benzing, D. H.,, and Burkhardt, E. N.. (1997)
Molecular evolution and adaptive radiation in Brocchinia (Bromeliaceae: Pitcairnioideae) atop the Tepuis of the Guyana Shield. Molecular Evolution and Adaptive Radiation. Givnish, T .J., Sytsma, K. J., eds. Cambridge, UK; Cambridge University Press pp. 259-311 - 22 Givnish, T. J.,, Evans, T. M.,, Pires, J. C.,, and Sytsma, K. J.. (1999); Polyphyly and convergent morphological evolution in Commelinales and Commelinidae: Evidence from rbcL sequence data. Mol. Phylogenet. Evol.. 12 360-385
- 23 Grant, J. R.. (1993); True Tillandsias misplaced in Vriesea (Bromeliaceae: Tillandsioideae). Phytologia. 75 170-175
- 24 Grant, J. R.. (1995); The resurrection of Alcantarea and Werauhia, a new genus (Bromeliaceae: Tillandsioideae). Trop. subtrop. Pflanzenwelt. 91 1-57
- 25 Gross, E.. (1988); Bromelienstudien IV. Zur Morphologie der Bromeliaceen-Samen unter Berücksichtigung systematisch-taxonomischer Aspekte. Trop. subtrop. Pflanzenwelt. 64 412-625
- 26 Halbritter, H.. (1992); Morphologie und systematische Bedeutung des Pollens der Bromeliaceae. Grana. 31 197-212
- 27 Horres, R., and Zizka, G.. (1995); Untersuchungen zur Blattsukkulenz bei Bromeliaceae. Beitr. Biol. Pflanzen. 69 43-76
-
28 Linder, H. P., and Kellogg, E. A.. (1995)
Phylogenetic patterns in the commelinid clade. Monocotyledons: Systematics and Evolution. Rudall, P. J., Cribb, P. J., Cutler, D. F., and Humphries, C. J., eds. Kew; Royal Botanic Gardens pp. 473-497 - 29 McDade, L. A., and Moody, M. L.. (1999); Phylogenetic relationships among Acanthaceae: Evidence from noncoding trnL-trnF chloroplast DNA sequences. Amer. J. Bot.. 86 70-80
- 30 Medina, E.. (1974); Dark CO2 fixation, habitat preference and evolution within the Bromeliaceae. Evolution. 28 677-686
-
31 Mez, C.. (1934 - 1935)
Bromeliaceae. Das Pflanzenreich, Vol. 4, 32. Engler, A., ed. Leipzig; W. Engelmann pp. 1-667 - 32 Ranker, T. A.,, Soltis, D. E.,, Soltis, P. S.,, and Gilmartin, A. J.. (1990); Subfamilial phylogenetic relationships of the Bromeliaceae: evidence from chloroplast DNA restriction site variation. Syst. Bot.. 15 425-434
- 33 Saitou, N., and Nei, M.. (1987); The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol.. 4 406-425
- 34 Sambrook, J.,, Fritsch, E. F.,, and Maniatis, T.. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor; Cold Spring Harbor Laboratory Press
- 35 Smith, L. B.. (1934); Geographical evidence on the lines of evolution in the Bromeliaceae. Bot. Jahrb.. 66 446-468
- 36 Smith, L. B., and Downs, R. J.. (1974 - 1979) Flora Neotropica 14, 1 - 3: Pitcairnioideae, Tillandsioideae, Bromelioideae. New York; Hafner Press (Vol. 1 + 2) New York; Bot. Gard. (Vol. 3)
-
37 Smith, L. B., and Till, W.. (1998)
Bromeliaceae. The Families and Genera of Vascular Plants, Vol. 4. Kubitzki, K., ed. Berlin, Heidelberg, New York; Springer pp. 74-99 - 38 Spencer, M. A., and Smith, L. B.. (1992); A revision of the genus Deuterocohnia Mez (Bromeliaceae: Pitcairnioideae). Bradea. 16 141-146
- 39 Spencer, M. A., and Smith, L. B.. (1993); Racinaea, a new genus of Bromeliaceae (Tillandsioideae). Phytologia. 74 151-160
- 40 Swofford, D. L., and Begle, D. P.. (1993) PAUP. Phylogenetic Analysis Using Parsimony. Version 3.1. Champaign, Illinois; Smithsonian Institute
- 41 Taberlet, P.,, Gielly, L.,, Pautou, G.,, and Bouvet, J.. (1991); Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol.. 17 1105-1109
- 42 Terry, R. G.,, Brown, G. K.,, and Olmstead, R. G.. (1997 a); Examination of subfamilial phylogeny in Bromeliaceae using comparative sequencing of the plastid locus ndhF. Amer. J. Bot.. 84 664-670
- 43 Terry, R. G.,, Brown, G. K.,, and Olmstead, R. G.. (1997 b); Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) using ndhF sequences. Syst. Bot.. 22 333-345
- 44 Terry, R. G.,, Smith, J. A. C.,, Crayn, D.,, and Winter, K.. (1998); Reassessment of subfamily relationships in Bromeliaceae using noncoding sequences of the chloroplast genome. Amer. J. Bot.. 85 161-162 (Abstract)
- 45 Thompson, J. D.,, Gibson, T. J.,, Plewniak, F.,, Jeanmouguin, F.,, and Higgins, D. G.. (1997); The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res.. 25 4876-4882
- 46 Tomlinson, P. B.. (1969) Anatomy of the monocotyledons. III Commelinales - Zingiberales. Oxford; Clarendon
- 47 Varadarajan, G. S., and Gilmartin, A. J.. (1988 a); Seed morphology of subfamily Pitcairnioideae (Bromeliaceae) and its systematic implications. Amer. J. Bot.. 75 808-818
- 48 Varadarajan, G. S., and Gilmartin, A. J.. (1988 b); Phylogenetic relationships of groups of genera within the subfamily Pitcairnioideae (Bromeliaceae). Syst. Bot.. 13 283-293
- 49 Varadarajan, G. S., and Gilmartin, A. J.. (1988 c); Taxonomic realignments within the subfamily Pitcairnioideae (Bromeliaceae). Syst. Bot.. 13 294-299
- 50 Vos, P.,, Hogers, R.,, Bleeker, M.,, Reijans, M.,, Van de Lee, T.,, Hornes, M.,, Frijters, A.,, Pot, J.,, Peleman, J.,, Kuiper, M.,, and Zabeau, M.. (1995); AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res.. 23 4407-4414
- 51 Will, B., and Zizka, G.. (1999); The genus Greigia Regel in Chile. Harvard Papers in Botany. 4 225-240
- 52 Zizka, G.,, Horres, R.,, Nelson, E. C.,, and Weising, K.. (1999); Revision of the genus Fascicularia Mez (Bromeliaceae). Bot. J. Linn. Soc.. 129 315-332
G. Zizka
Botanisches Institut der Johann Wolfgang Goethe-Universität und Forschungsinstitut Senckenberg Senckenberganlage 25
60325 Frankfurt/M. Germany
Email: gzizka@sngkw.uni-frankfurt.de
Section Editor: M. Hasebe