Subscribe to RSS
DOI: 10.1055/s-0041-1726483
Investigating the Scientific ‘Infodemic’ Phenomenon Related to the COVID-19 Pandemic
- a Position Paper from the IMIA Working Group on ˝Language and Meaning in BioMedicine”Summary
Objectives: The study aims at understanding the structural characteristics and content features of COVID-19 literature and public health data from the perspective of the ‘Language and Meaning in Biomedicine’ Working Group (LaMB WG) of IMIA. The LaMB WG has interest in conceptual characteristics, transparency, comparability, and reusability of medical information, both in science and practice.
Methods: A set of methods were used (i) investigating the overall speed and dynamics of COVID-19 publications; (ii) characterizing the concepts of COVID-19 (text mining, visualizing a semantic map of related concepts); (iii) assessing (re)usability and combinability of data sets and paper collections (as textual data sets), and checking if information is Findable, Accessible, Interoperable, and Reusable (FAIR). A further method tested practical usability of FAIR requirements by setting up a common data space of epidemiological, virus genetics and governmental public health measures’ stringency data of various origin, where complex data points were visualized as scatter plots.
Results: Never before were that many papers and data sources dedicated to one pandemic. Worldwide research shows a plateau at ∼ 2,200 papers per week – the dynamics of areas of studies being slightly different. Ratio of epidemic modelling is rather low (∼1%). A few ‘language and meaning’ methods, such as using integrated terminologies, applying data and metadata standards for processing epidemiological and case-related clinical information and in general, principles of FAIR data handling could contribute to better results, such as improved interoperability and meaningful knowledge sharing in a virtuous cycle of continuous improvements.
http://retractiondatabase.org/RetractionSearch.aspx#?ttl%3dcovid-19
Publication History
Article published online:
21 April 2021
© 2021. IMIA and Thieme. This is an open access article published by Thieme under the terms of the Creative Commons Attribution-NonDerivative-NonCommercial License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commercial purposes, or adapted, remixed, transformed or built upon. (https://creativecommons.org/licenses/by-nc-nd/4.0/)
Georg Thieme Verlag KG
Rüdigerstraße 14, 70469 Stuttgart, Germany
-
References
- 1 Editors of Merriam-Webster. Words We’re Watching: ‘Infodemic’ [cited 2020 Aug 10]. Available from: https://www.merriam-webster.com/words-at-play/words-were-watching-infodemic-meaning
- 2 Balkanyi L, Cornet R. History and charter of IMIA Working Group ‘Language and Meaning in Biomedicine’, earlier called ‘Medical Concept Representation’ (Version v. 1.0.0.). Zenodo 2019. Available from: http://doi.org/10.5281/zenodo.3374148
- 3 Mehra MR, Desai SS, Kuy SR, Henry TD, Patel AN. Retraction: Cardiovascular Disease, Drug Therapy, and Mortality in Covid-19. N Engl J Med 2020; 382 (26) 2582
- 4 Flack J, Mitchell M. Complex Systems Science Allows Us to See New Paths Forward [cited 2020 Aug 21]. Aeon. Available from: https://aeon.co/essays/complex-systems-science-allows-us-to-see-new-paths-forward
- 5 Chen Q, Allot A, Lu Z. Keep up with the latest coronavirus research. Nature 2020;579(7798):193. Available from: https://www.ncbi.nlm.nih.gov/research/coronavirus/
- 6 Sinclair S, Rockwell G. Voyant Tools [cited 2020 Aug 20]. Available from: https://voyant-tools.org/?view=ScatterPlot&corpus=a8dc9118215c367fe859cf811f49c68
- 7 Bakken S. The journey to transparency, reproducibility, and replicability. J Am Med Inform Assoc 2019; 26: 185-7
- 8 Wilkinson M, Dumontier M, Aalbersberg I, Appleton G, Axton M, Baak A. et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 2016; 3: 160018 . Available from: https://doi.org/10.1038/sdata.2016.18
- 9 Balkanyi L, Lukacs L, Dorkó B. Data set, combining epidemiological, genetics, and government stringency data of COVID-19 pandemic. Zenodo Data Set. DOI: 10.5281/zenodo.4152999, October 29, 2020
- 10 [cited: 2020 Aug 10]. Available from https://covid19.who.int/
- 11 [cited: 2020 Aug 10]. Available from https://www.ecdc.europa.eu/en/covid-19/data
- 12 [cited: 2020 Aug 10]. Available from https://medisys.newsbrief.eu/medisys/homeedition/en/home.html
- 13 [cited: 2020 Aug 10]. Available from https://coronavirus.jhu.edu/map.html
- 14 [cited: 2020 Aug 12]. Available from https://github.com/owid/covid-19-data/tree/master/public/data
- 15 [cited: 2020 Aug 12]. Available from https://www.worldometers.info/coronavirus/?zarsrc=130
- 16 [cited: 2020 Aug 13]. Available from https://www.epicov.org/epi3/frontend#f873d
- 17 [cited: 2020 Aug 13]. Available from https://www.ncbi.nlm.nih.gov/genbank/
- 18 [cited: 2020 Aug 13]. Available from https://bigd.big.ac.cn/gwh/browse/virus/coronaviridae
- 19 [cited: 2020 Aug 13]. Available from https://www.covid19dataportal.org/sequences?db=embl
- 20 [cited: 2020 Aug 13]. Available from https://www.bsg.ox.ac.uk/research/research-projects/coronavirus-government-response-tracker
- 21 [cited: 2020 Aug 13]. Available from https://www.coronanet-project.org/index.html
- 22 [cited: 2020 Aug 13]. Available from https://www.who.int/publications/i/item/WHO-2019-nCoV-Clinical_CRF-2020.4
- 23 [cited: 2020 Aug 13]. Available from https://www.cdc.gov/library/researchguides/2019novelcoronavirus/researcharticles.html
- 24 [cited: 2020 Jul 10]. Available from https://search.bvsalud.org/global-literature-on-novel-coronavirus-2019-ncov/?output=site&lang=en&from=0&sort=DATAENTRY_ASC&format=summary&count=20&fb=&page=1&skfp=&index=tw&q=
- 25 Wang LL, Lo K, Chandrasekhar Y, Reas R, Reas R, Yang J, Eide D. et al. CORD-19: The COVID-19 Open Research Dataset. ArXiv 2020 Apr 22;arXiv:2004.10706v2. [Preprint]
- 26 Jones S, Grootveld M. How FAIR are your data?. Zenodo, 10.5281/zenodo.3405141, Nov. 2017. Available from: https://doi.org/10.5281/zenodo.3405141
- 27 Rauh O. Kmc and kmc User Guide. kmc version 001; June 2013 [cited 2020 Aug 13]. Available from: https://www.orauh.de/software/kmc-clustering-tool/
- 28 Bodenreider O, Cornet R, Vreeman DJ. Recent Developments in Clinical Terminologies - SNOMED CT, LOINC, and RxNorm. Yearb Med Inform 2018; 27 (01) 129-39
- 29 Jacobsen A, Azevedo RM, Juty N, Batista D, Coles S, Cornet R. et al. FAIR Principles: Interpretations and Implementation Considerations. Data Intelligence 2020; 2 (1-2): 10-29
- 30 Schulz S, Chronaki C, . Chapter 3: Standards in Healthcare Data. In: Kubben P, Dumontier M, Dekker A. editors. Fundamentals of Clinical Data Science. 2019: 19 . Available from: https://doi.org/10.1007/978-3-319-99713-1_3
- 31 Balkanyi L, Cornet R. The Interplay of Knowledge Representation with Various Fields of Artificial Intelligence in Medicine. Yearb Med Inform 2019; 28 (01) 27-34